Function reference • OpenSpecy

All functions

adj_intens(): Adjust spectral intensities to standard absorbance units.

restrict_range() flatten_range(): Range restriction and flattening for spectra

adj_wave(): Adjust wavelength to wavenumbers for Raman

as_OpenSpecy() is_OpenSpecy() check_OpenSpecy() OpenSpecy() gen_grid(): Create OpenSpecy objects

conform_spec(): Conform spectra to a standard wavenumber series

adj_res() conform_res() adj_neg() mean_replace() is_empty_vector(): Normalization and conversion of spectral data

collapse_spec() def_features(): Define features

head(<OpenSpecy>) print(<OpenSpecy>) plot(<OpenSpecy>) summary(<OpenSpecy>) as.data.frame(<OpenSpecy>) as.data.table(<OpenSpecy>): Generic Open Specy Methods

human_ts(): Create human readable timestamps

plotly_spec() heatmap_spec() interactive_plot(): Interactive plots for OpenSpecy objects

write_spec() read_spec() as_hyperSpec(): Read and write spectral data

make_rel(): Make spectral intensities relative

check_lib() get_lib() load_lib() rm_lib(): Manage spectral libraries

manage_na(): Ignore or remove NA intensities

c_spec() sample_spec() merge_map(): Manage spectral objects

cor_spec() match_spec() ident_spec() get_metadata() max_cor_named() filter_spec() ai_classify() fill_spec() os_similarity(): Identify and filter spectra

process_spec(): Process Spectra

raman_hdpe: Sample Raman spectrum

read_envi(): Read ENVI data

read_text() read_asp() read_spa() read_spc() read_jdx() read_extdata(): Read spectral data

read_any() read_many() read_zip(): Read spectral data from multiple files

read_opus(): Read spectral data from Bruker OPUS binary files

read_opus_raw(): Read a Bruker OPUS spectrum binary raw string

run_app(): Run Open Specy app

sig_noise(): Calculate signal and noise metrics for OpenSpecy objects

smooth_intens() calc_window_points(): Smooth spectral intensities

spatial_smooth(): Spatial Smoothing of OpenSpecy Objects

spec_res(): Spectral resolution

split_spec(): Split Open Specy objects

subtr_baseline(): Automated background subtraction for spectral data

test_lib: Test reference library